legend  pdf

interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

home
updated Mon Dec 18 15:55:53 2023

structure name	CRYO-EM STRUCTURE OF THERMOCOCCUS KODAKARENSIS RNA POLYMERASE (DNA-DIRECTED RNA POLYMERASE SUBUNIT)
source	THERMOCOCCUS KODAKARENSIS KOD1
experiment	NMR
structural superfamily	beta and beta-prime subunits of DNA dependent RNA-polymerase;
sequence family	RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6kf9_A interface=831,832, kkvigsiefgilspqeirkmsaaeitvpdtydddgypiegglmdkrlgvidpglrcetcgaragecpghfghielarpvihvgfaktihrvlestcrecgrikltdeeieeymqkfevmgdrkgavdklikeihkkakermvcphcgapqfpikferptiywelrkdeegneykhrmmpsevrdrlekipdkdlpllglhpeksrpewmvltvlpvppvtmrpsitlesgiraeddlthklvdiirinnrlksnieagapqliiedlwdllqyhvttyinnetsgvppakhksgrplktlaqrlkgkegrfrgnlsgkrvnfsartvispdpmisinevgvplavameltvpekvtefnyeklkqrvlngpekypganyvidpegrrirlmesnreliaekldigwtverhledgdvvlfnrqpslhrmsimahrvrvmpyrtfrlnlpvcppynadfdgdemnlhvpqteeaqaeakilmevqnhiispryggpliagiqdhisggylltregayftryeveqmlmfagmdvnelpepdkyengeplwsgktifslllpddltiwyrnklcdepercealeklieeklipdpeevrklaydgfvyiqngkllsgavdkkaygredgklldiivreygverarqfldqvtkltiwvithkgfttaiddedlpqeaidriheiireaeekvqrlieaykrgeleplpgktleetleskimavlaeardnagkvaerylgmnnhavimaktgargkilnitqmaamlgqqsirgkrlyrgyrgrvlthfkpgdlgarargfvtnsyksgltpqeyffhamggreglvdtavrTAqsgymqrrlinalqdlkvdydgtvrdptgiivqfkygedgvdpmkswqgktvdvdrvivrtllkmrgg