6iml_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	THE CRYSTAL STRUCTURE OF ASFVLIG:CT1 COMPLEX (DNA ligase)
reference	Chen et al. 'Nat 10 387 2019
source	African swine fever virus
experiment	X-ray (resolution=2.35, R-factor=0.222)
structural superfamily	DNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;
sequence family	ATP dependent DNA ligase domain;
multimeric complexes	6imj_AB
redundant complexes	6imj_A 6imk_A 6imn_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6iml_A interface=86,213,302,331,397, mlnqfpgqysnnifcfppiesetksgkkaswiicvqvvqhntiipitdemfstdvkdavaeiftkffveegavriskmtrvtegkNlgkknattvvhqafkdalskynrharqkrgmippmlvkyfniipktffeeetdpivqrkrngvravacqqgdgcillysrtekeflgldnikkelkqlylfidvrvyldgelylhrkplqwiagqaNaktdsselhfyvfdcfwsdqlqmpsnkrqqlltnifkqkedltfihqvenfsvknvdealrlkaqfikegyegaivrnangpyepgynNyhsahlaklkplldaefilvdytqgkkgKdlgailwvcelpnkkrfvvtpkhltyadryalfqkltpalfkkhlygkeltveyaelspktgiplQaravgf

  
  KGSG--------NC--KG--QT                     +------------6iml_A    
                                           +-3 
  ------FG------LCKGTAFC                   ! !         +--6gdr_A    
                                           ! +---------1 
  ----------MG------SAFC         +---------4           +--6rar_I    
                                 !         ! 
  ----HTFT----------TTFG   L     !         !       +-----6p0c_A    
                               +-5         +-------2 
  ----------KT------STFG       ! !                 +-----6bkg_A    
                             --6 ! 
  ------------------TAFG       ! +-----------------------2q2t_A    
                               ! 
  --------NG--RA--------   L   +-------------------------2owo_A

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updated Tue Dec 19 13:07:31 2023