6ide_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE VIBRIO CHOLERA VQMA-LIGAND-DNA COMPLEX PROVIDES MOLECULAR MECHANISMS FOR DRUG DESIGN
reference	Guo et al. 'J. 294 2580 2019
source	Vibrio cholerae
experiment	X-ray (resolution=2.51, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;PYP-like sensor domain PAS domain;
reference complex	6ide_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ide_A interface=173,174,176, pnhltleqislfkqlpgywgckdlnsvfvyanqaygeliglkraedcigrtdfempsptaacaaefqqqdryvietghsvkvldihpypdghwhahiftktpwrdsqgkiqgtiffgqdltdtailevghwvcratglsttlkltaresevlflllygkkpqhiarvmgisiKTvEgyeaklrskfgalskdqlidlaldrgfgsvipktllrkqlsvvlsdhtip > 6ide_B interface=177,178,180, pnhltleqislfkqlpgywgckdlnsvfvyanqaygeliglkraedcigrtdfempsptaacaaefqqqdryvietghsvkvldihpypdghwhahiftktpwrdsqgkiqgtiffgqdltdtailevghwvcratglststtftlkltaresevlflllygkkpqhiarvmgisiKTvEgyeaklrskfgalskdqlidlaldrgfgsvipktllrkqlsvvlsdht
interface signature	KTE/KTE

Estimated binding specificities ?

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# IC=2.889 IC/col=0.241 n_of_columns=12

specificity:

A |   9   9   7  20  24  24  24  24  20   9  13   8
C |   9   9   8  22  24  24  24  24  36  67  63  72
G |  67  69  74  34  24  24  24  24  20   9  10   8
T |  11   9   7  20  24  24  24  24  20  11  10   8

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updated Sat Dec 16 11:21:39 2023