6gmh_ABEUZ : 3D-footprint complex

structure name	STRUCTURE OF ACTIVATED TRANSCRIPTION COMPLEX POL II-DSIF-PAF-SPT6
source	SUS SCROFA / HOMO SAPIENS
experiment	NMR
structural superfamily	Translation proteins SH3-like domain;
reference complex	5oik_Z 6gmh_U
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6gmh_A interface=220,281,314,412,804,805,1339, sacplrtikrvqfgvlspdelkrmsvteggikypetteggrpklgglmdprqgviertgrcqtcagnmtecpghfghielakpvfhvgflvktmkvlrcvcffcskllvdsnnpkikdilakskgqpkkrlthvydlckgknggcgryqprirrsglelyaewkkkillspervheifkrisdeecfvlgmepryarpewmivtvlpvpplsvrpavvmQrnqddlthkladivkinnqlrrneqngaaahviaedvkllqfhvatmvdnelpglpramqKsgrplkslkqrlkgkegrvrgnlmgkrvdfsaRtvitpdpnlsidqvgvprsiaanmtfaeivtpfnidrlqelvrrgnsqypgakyiirdngdridlrfhpkpsdlhlqtgykverhmcdgdivifnrqPtlhkmsmmghrvrilpwstfrlnlsvttpynadfdgdemnlhlpqsletraeiqelamvprmivtpqsnrpvmgivqdtltavrkftkrdvflergevmnllmflstwdgkvpqpailkprplwtgkqifsliipghincirthsthpddedsgpykhispgdtkvvvengelimgilckkslgtsagslvhisylemghditrlfysniqtvinnwllieghtigigdsiadsktyqdiqntikkakqdvieviekahnneleptpgntlrqtfenqvnrilndardktgssaqkslseynnfksmvvsgakgskinisqviavvgqqnvegkripfgfkhrtlphfikddygpesrgfvensylagltptefffhamggreglidtavkTAetgyiqrrliksmesvmvkydatvrnsinqvvqlrygedglagesvefqnlatlkpsnkafekkfrfdytneralrrtlqedlvkdvlsnahiqnelerefermredrevlrvifptgdskvvlpcnllrmiwnaqkifhinprlpsdlhpikvvegvkelskklvivngddplsrqaqenatllfnihlrstlcsrrmaeefrlsgeafdwllgeieskfnqaiahpgemvgalaaqslgepatqmtlntfhyagvsaknvtlgvprlkeliniskkpktpsltvfllgqsardaerakdilcrlehttlrkvtantaiyydpnpqstvvaedqewvnvispwllrveldrkhmtdrkltmeqiaekinagfgddlncifnddnaeklvlririmndddvflrciesnmltdmtlqgieqiskvymhlpqtdnkkkiiitedgefkalqewiletdgvslmrvlsekdvdpvrttsndiveiftvlgieavrkalerelyhvisfdgsyvnyrhlallcdtmtcrghlmaitRhgvnrqdtgplmkcsfeetvdvlmeaaahgesdpmkgvsenimlgqlapagtgcfdllldaekckygmeipgapaygawspsvgsgmtpgaagfpsaasd > 6gmh_B interface= eitpdlwqeacwivissyfdekglvrqqldsfdefiqmsvqrivedappidlqaeaqhasppryllkfeqiylskpthwerdgapspmmpnearlrnltysaplyvditktvikegeeqlqtqhqktfigkipimlrstycllngltdrdlcelnecpldpggyfiingsekvliaqekmatntvyvfakkdskyaytgecrsclenssrptstiwvsmLaraigqrivatlpyikqevpiiivfralgfvsdrdilehiiydfedpemmemvkpsldeaFviqeqnvalnfigsrgakpgvtkekrikyakeVlqkemlphvgvsdfcetkkayflgymvhrlllaalgrrelddrdhygnkrldlagpllaflfrgmfknllkevriyaqkfidrgkdfnlelaiktriIsdglkyslatgnwgdqkkahqaragvsqvlnrltfastlshlrrlnspigrdgklakprqlhntlwgmvcpaetpeghavglvknlalmayisvgsqpspilefleewsmenleeispaaiadatkifvngcwvgihkdpeqlmntlrklrrqmdiivsevsmirdirereiriytdagricrpllivekqklllkkrhidqlkereynnyswqdlvasgvveyidtleeetvmlamtpddlqekevaycstythceihpsmilgvcasiipfpdhnqsprntyqsamgkqamgvyitnfhvrmdtlahvlyypqkplvttrsmeylrfrelpaginsivaiasytgynqedsvimnrsavdrgffrsvfyrsykeqeskgfdqeevfekpTRetcqgmrhaiydkldddgliapgvrvsgddviigktvtlptkrdcstflrtsetgivdqvmvtlnqegykfckirvrsvripqigdkfasrhgqkgtcgiqyrqedmpftcegitpdiiinphaipsrmtighlieclqgkvsankgeigdatpfndavnvqkisnllsdygyhlrgnevlyngftgrkitsqifigptyyqrlkhmvddkihsrargpiqilnrqpmegrsrdgglrfgemerdcqiahgaaqflrerlfeasdpyqvhvcnlcgimaiantrthtyecrgcrnktqislvrmpyackllfqelmsmsiaprmmsv > 6gmh_E interface= ddeeetyrlwkirktimqlchdrgylvtqdeldqtleefkaqfgdkpsegrprrtdltvlvahnddptdqmfvffpeepkvgiktikvycqrmqeenitralivvqqgmtpsakqslvdmapkyileqflqqellinitehelvpehvvmtkeevtellaryklrenqlpriqagdpvaryfgikrgqvvkiirpsetagryityrlvq > 6gmh_U interface= xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx > 6gmh_Z interface= dpnlwtvkckigeerataislmrkfiayqftdtplqiksvvapehvkgyiyveaykqthvkqaiegvgnlrlgywnqqmvpikemtdvlkvvkanlkpkswvrlkrgiykddiaqvdyvepsqntislkmipridydrikappqrlfdaekirslggdvasdgdflifegnrysrkgflfksfamsavitegvkptlselekfrehnfqpgdnvevcegElinlqgkilsvdgnkitimpkhedlkdmlefpaqelrkyfkmgdhvkviagrfegdtgliVrveenfvilfsdltmhelkvlprdlqlcsetaSgvdvggqhewgelvqldpqtvgvivrleretfqvlnmygkvvtvrhqavtrkkdnrfavaldseqnnihvkdivkvidgphsgregeirhlfrsfafLhckklvenggmfvcktrhlvlaneligqtvrisqgpykgyigvvkdatestarvelhstcqtisvdrqrlttvg
interface signature	QKRPTAR/LFVITR///EVSL

Estimated binding specificities ?

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# IC=5.419 IC/col=0.361 n_of_columns=15

specificity:

A |   0  24  24   0  52   1  24  24  24  24  24  24  24   0   0
C |   8  24  24   0  17  17  24  24  24  24  24  24  24   0   0
G |   8  24  24  96  10  61  24  24  24  24  24  24  24   0  96
T |  80  24  24   0  17  17  24  24  24  24  24  24  24  96   0

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updated Sat Dec 16 10:52:47 2023