6gdr_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	DNA BINDING WITH A MINIMAL SCAFFOLD: STRUCTURE-FUNCTION ANALYSIS OF LIG E DNA LIGASES (DNA LIGASE)
reference	Williamson et al. 'Nucleic 46 8616 2018
source	ALTEROMONAS MEDITERRANEA
experiment	X-ray (resolution=2.33, R-factor=0.221)
structural superfamily	DNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;
sequence family	ATP dependent DNA ligase domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6gdr_A interface=73,195,217,249, ivdglqlakqyghqdiniaeywvsekldgirarwdgtelrtrnnnkidapawftanwpkatidgelwiargqFertasivlskltlpskrwakvrfmafdmpvagqsfdsrlnmlnnlkeatpnptfavvsqftlssvnaleekleqvtlsggeglmlhhkkafyhsgrsdklikvkqfedaeakvlahfagkgKfkgmmgsllvetpagvqfklgTgfsekerrappavgswvtfkfygvtkngkprFasflrvr

  
  --FG--LCKGTAFC                            +---6gdr_A    
                                        +---1 
  ----MG----SAFC       +----------------2   +---6rar_I    
                       !                ! 
  HTFT--RCKGTTFG   L --3                +-------6p0c_A    
                       ! 
  ----------HC--   L   +------------------------2owo_A

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updated Tue Dec 19 12:58:43 2023