6fj5_ABCD : 3D-footprint complex

structure name	NEW INSIGHTS INTO THE ROLE OF DNA SHAPE ON ITS RECOGNITION BY P53 PROTEINS (COMPLEX P53DBD-AGG-HG)
reference	Golovenko et al. Structure 26 1237 2018
source	Homo sapiens
experiment	X-ray (resolution=2.05, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fj5_A interface=27,183,184,187, sssvpsqktyqgsygfrlgflhsgtaKsvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenlrkk > 6fj5_B interface=27,183,184,187, sssvpsqktyqgsygfrlgflhsgtaKsvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenlrkk > 6fj5_C interface=27,183,184,187, sssvpsqktyqgsygfrlgflhsgtaKsvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenlrkk > 6fj5_D interface=27,183,184,187, sssvpsqktyqgsygfrlgflhsgtaKsvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenlrkk
interface signature	KACR/KACR/KACR/KACR

Estimated binding specificities ?

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# IC=18.240 IC/col=1.013 n_of_columns=18

specificity:

A |   7   0   0  96   0   0   0   7  24  24   7   0   0  96   0   0   0   7
C |   7   0  96   0   0   0  96  73  24  24   9   0  96   0   0   0  96  73
G |  73  96   0   0   0  96   0   9  24  24  73  96   0   0   0  96   0   7
T |   9   0   0   0  96   0   0   7  24  24   7   0   0   0  96   0   0   9

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updated Sat Dec 16 10:25:25 2023