6fix_ABDE : 3D-footprint complex

structure name	ANTITOXIN GRAA IN COMPLEX WITH ITS OPERATOR
reference	Talavera et al.
source	Pseudomonas putida
experiment	X-ray (resolution=3.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	6fix_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fix_A interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_B interface=38,39,40,42, hlkngmrpihpgeilreefqkemgfsaaalaralgvaTPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlva > 6fix_D interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_E interface=32,33,34,36, rpihpgeilreefqkemgfsaaalaralgvaTPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv
interface signature	AATPTN/TPTN/AATPTN/TPTN

Estimated binding specificities ?

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# IC=10.457 IC/col=0.581 n_of_columns=18

specificity:

A |  89   3  24  24   2   0  96  96  24  24   0  17  69  24  24  24   2   8
C |   2   2  24  24   2   0   0   0  24  24   0  15  11  24  24  24   3  11
G |   3   2  24  24   3   0   0   0  24  24   0  22   8  24  24  24  89   8
T |   2  89  24  24  89  96   0   0  24  24  96  42   8  24  24  24   2  69

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updated Sat Dec 16 10:25:14 2023