6f59_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HUMAN BRACHYURY (T) G177D VARIANT IN COMPLEX WITH DNA
reference	Burgess-Brown et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=2.15, R-factor=?)
structural superfamily	p53-like transcription factors;
reference complex	6f59_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6f59_A interface=29,150,151,167,171, elrvgleeselwlrfkeltnemivtkngRrmfpvlkvnvsgldpnamysflldfvaadnhrwkyvngewvpqapscvyihpdspnfgahwmkapvsfskvkltnklngggqimlnslhkyeprihivrvgdpqrmitshcfpetqfiavTAyqneeitalkikynpFakaFldakers > 6f59_B interface=30,157,158,174,177,178, gelrvgleeselwlrfkeltnemivtkngRrmfpvlkvnvsgldpnamysflldfvaadnhrwkyvngewvpggkpepqapscvyihpdspnfgahwmkapvsfskvkltnklngggqimlnslhkyeprihivrvgdpqrmitshcfpetqfiavTAyqneeitalkikynpFakAFldakers
interface signature	RTAFF/RTAFAF

Estimated binding specificities ?

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# IC=9.094 IC/col=0.505 n_of_columns=18

specificity:

A |   2  24  24  24   0  96   4  16  24  72  24  14   2   0  24  24  24  88
C |   3  24  24  24  96   0  73  58  24   2  24  12   2   0  24  24  24   2
G |   2  24  24  24   0   0  15  10  24   2  24  68   3  96  24  24  24   2
T |  89  24  24  24   0   0   4  12  24  20  24   2  89   0  24  24  24   4

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updated Sat Dec 16 10:22:25 2023