6en8_C : 3D-footprint complex

structure name	SAFADR IN COMPLEX WITH DSDNA (Transcriptional regulator TetR family)
reference	'Nat 10 1542 2019
source	Sulfolobus acidocaldarius
experiment	X-ray (resolution=3.29, R-factor=0.204)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
sequence family	Bacterial regulatory proteins, tetR family;
multimeric complexes	6en8_ABE 6en8_DF
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6en8_C interface=41,42,44,46,47, pktekgkeslnkildasveliadkgflstsinditskagvAYgLfYFyfkskhdildeiirqfnrnmryylktytqnldsridvekvgmkkflewmnenkkyykifietqvhrpdiykwhfmklaeryttglseamrrgeiinvdpellsyvligiahmlgkryvlwsnsgltlkqqrdldliienmltpr
interface signature	AYLYF

Estimated binding specificities ?

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# IC=6.246 IC/col=0.892 n_of_columns=7

specificity:

A |   6   0   6   0  96   0  13
C |  75   0   6  13   0   0   6
G |   6   0   6  68   0   0  13
T |   9  96  78  15   0  96  64

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ------TTRG----YTWA--------   L   +-----------------------------7jnp_A    
                                   ! 
  --VT--AGDT--TTYTLA--------   L   !                            +5gpc_B    
                                 --4           +----------------1 
  --LC--RTPTPTSTYT----------   L   !  +--------2                +6nsn_B    
                                   !  !        ! 
  --MTRGTGPT--ATYTWT--------   L   +--3        +-----------------5yej_B    
                                      ! 
  RG----HCRG--------RGQAQGKG   L      +--------------------------2glo_A

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updated Tue Dec 19 12:45:39 2023