6bsh_AB : 3D-footprint complex

structure name	STRUCTURE OF HIV-1 RT COMPLEXED WITH RNA/DNA HYBRID IN THE RNA HYDROLYSIS MODE
reference	Tian et al. 'Proc. 115 507 2018
source	HUMAN IMMUNODEFICIENCY VIRUS 1
experiment	X-ray (resolution=2.65, R-factor=?)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
reference complex	6bsg_B 7ozw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6bsh_A interface=60,217,252,435,461,462,488, pietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfrKlvdfrelnkktqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfrkqnpdiviyqymddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwMgyelhpdkwtvqpivlpekdswtvndiqklvgklNwasqiypgikvrqlckllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwvpewefvntpplvklwyqlekepivgaetfyvdgaasRetklgkagyvtnkgrqkvvtltdttNQktelqaihlalqdsglevnivtdsqYalgiiqaqpdqseselvnqiieqlikkekvylawvpahkgiggneqvdklvsagir > 6bsh_B interface=389, ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdgtkwrklvdfrelnkktqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfrkqnpdiviyqymddlyvgsdleigqhrtkieelrqhllrwelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlckllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyartndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwvpewefvNtpplvklwyqlekep
interface signature	KMNRNQY/N

Estimated binding specificities ?

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# IC=7.099 IC/col=0.355 n_of_columns=20

specificity:

A |  13   0   0   0  24   0  24  24  24  24  24  24  24  24  24  24  13  24  24   0
C |  16   0  96  96  24  96  24  24  24  24  24  24  24  24  24  24  16  24  24  96
G |  13  96   0   0  24   0  24  24  24  24  24  24  24  24  24  24  54  24  24   0
T |  54   0   0   0  24   0  24  24  24  24  24  24  24  24  24  24  13  24  24   0

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updated Sat Dec 16 08:33:19 2023