5yi3_IJ : 3D-footprint complex

structure name	STRUCTURE OF LACTOCOCCUS LACTIS ZITR, C30S MUTANT IN COMPLEX WITH DNA
reference	Song et al. Proc.Natl.Acad.Sci.USA 114 13661 2017
source	Lactococcus lactis subsp. lactis (strain IL1403) / Lactococcus lactis subsp. lactis (strain IL1403) / Lactococcus lactis subsp. lactis (strain IL1403) / Lactococcus lactis subsp. lactis (strain IL1403)
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5yi2_J
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yi3_I interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgksesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq > 5yi3_J interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgksesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq
interface signature	SPAATK/SPAATK

Estimated binding specificities ?

readout + contact

# IC=12.421 IC/col=1.035 n_of_columns=12

specificity:

A |   6   0  88  96   0   3  72   0   6   3  84  92
C |   3   0   3   0  96   3   6   0   3   3   3   4
G |   3   0   2   0   0   6   7  96   3   3   6   0
T |  84  96   3   0   0  84  11   0  84  87   3   0

scan!

home
updated Sat Dec 16 07:38:45 2023