5yi2_EF : 3D-footprint complex

structure name	STRUCTURE OF LACTOCOCCUS LACTIS ZITR, WILD TYPE IN COMPLEX WITH DNA
reference	Song et al. Proc.Natl.Acad.Sci.USA 114 13661 2017
source	Lactococcus lactis subsp. lactis
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5yi2_J
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yi2_E interface=64,65,66,67,69,70, gmslanqidqflgtimqfaenkheillgkcesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq > 5yi2_F interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgkcesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq
interface signature	SPAATK/SPAATK

Estimated binding specificities ?

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# IC=10.611 IC/col=0.884 n_of_columns=12

specificity:

A |   0  14  72  76   0  24  72   0   0   7  91  96
C |   0   9   1   9  96  24   4   0   0   4   1   0
G |   0   9   9   7   0  24  11  96   0   9   0   0
T |  96  64  14   4   0  24   9   0  96  76   4   0

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updated Sat Dec 16 07:38:35 2023