5xs0_FGHNOP : 3D-footprint complex

structure name	STRUCTURE OF A SSDNA BOUND TO THE OUTER DNA BINDING SITE OF RAD52
reference	Kurumizaka et al. iScience 3 50 2018
source	Homo sapiens
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	dsRNA-binding domain-like;
reference complex	5xs0_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xs0_F interface=108,109,110, cfgqcqytaeeyqaiqkalrqrlgpeyissrmagggqkvcyieghrvinlanemfgyngwahsitqqnvdfvdlnngkfyvgvcafvrvqlkdgsyhedvgygvsegLKSkalslekarkeavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xs0_G interface=78,108,109,110, cfgqcqytaeeyqaiqkalrqrlgpeyissrmagggqkvcyieghrvinlanemfgyngwahsitqqnvdfvdlnngKfyvgvcafvrvqlkdgsyhedvgygvsegLKSkalslekarkeavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xs0_H interface= cfgqcqytaeeyqaiqkalrqrlgpeyissrmagggqkvcyieghrvinlanemfgyngwahsitqqnvdfvdlnngKfyvgvcafvrvqlkdgsyhedvgygvsegLKSkalslekarkeavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xs0_N interface=108,109,110,113, cfgqcqytaeeyqaiqkalrqrlgpeyissrmagggqkvcyieghrvinlanemfgyngwahsitqqnvdfvdlnngkfyvgvcafvrvqlkdgsyhedvgygvsegLKSkaLslekarkeavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xs0_O interface=78,108,109,110, cfgqcqytaeeyqaiqkalrqrlgpeyissrmagggqkvcyieghrvinlanemfgyngwahsitqqnvdfvdlnngKfyvgvcafvrvqlkdgsyhedvgygvsegLKSkalslekarkeavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xs0_P interface= cfgqcqytaeeyqaiqkalrqrlgpeyissrmagggqkvcyieghrvinlanemfgyngwahsitqqnvdfvdlnngKfyvgvcafvrvqlkdgsyhedvgygvsegLKSkalslekarkeavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc
interface signature	LKS/KLKS/KLKS/LKSL/KLKS/KLKS

Estimated binding specificities ?

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# IC=8.429 IC/col=0.843 n_of_columns=10

specificity:

A |   0   9  16   0  12  12   0   0   7   0
C |  96  67  45  96  60  60  96  96  75  96
G |   0   9  19   0  12  12   0   0   7   0
T |   0  11  16   0  12  12   0   0   7   0

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updated Sat Dec 16 07:20:52 2023