5xrz_ABCDEFGHIJK : 3D-footprint complex

structure name	STRUCTURE OF A SSDNA BOUND TO THE INNER DNA BINDING SITE OF RAD52
reference	Kurumizaka et al. iScience 3 50 2018
source	Homo sapiens
experiment	X-ray (resolution=3.60, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xrz_A interface=31,41,117,121, cfgqcqytaeeyqaiqkalrqrlgpeyissRmagggqkvcYieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkEavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_B interface=31,33,39,117,121,143, cfgqcqytaeeyqaiqkalrqrlgpeyissRmAgggqkVcyieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkEavtdglkralrsfgnalgnciLdkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_C interface=31,33,39,41,117, cfgqcqytaeeyqaiqkalrqrlgpeyissRmAgggqkVcYieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkeavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_D interface=31,39,41,117,121,145, cfgqcqytaeeyqaiqkalrqrlgpeyissRmagggqkVcYieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkEavtdglkralrsfgnalgncildKdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_E interface=31,39,117,145, cfgqcqytaeeyqaiqkalrqrlgpeyissRmagggqkVcyieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkeavtdglkralrsfgnalgncildKdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_F interface=31,33,39,117,121, cfgqcqytaeeyqaiqkalrqrlgpeyissRmAgggqkVcyieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkEavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_G interface=31,39,41,117,121,143, cfgqcqytaeeyqaiqkalrqrlgpeyissRmagggqkVcYieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkEavtdglkralrsfgnalgnciLdkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_H interface=31,33,39,117, cfgqcqytaeeyqaiqkalrqrlgpeyissRmAgggqkVcyieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkeavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_I interface=31,39,117,121, cfgqcqytaeeyqaiqkalrqrlgpeyissRmagggqkVcyieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkEavtdglkralrsfgnalgncildkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_J interface=31,39,117,121,143, cfgqcqytaeeyqaiqkalrqrlgpeyissRmagggqkVcyieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalsleKarkEavtdglkralrsfgnalgnciLdkdylrslnklprqlplevdltkakrqdlepsveearynsc > 5xrz_K interface=39,143,145, cfgqcqytaeeyqaiqkalrqrlgpeyissrmagggqkVcyieghrvinlanemfgyngwahsitqqnvdfvdlnngafyvgvcafvrvqlkdgsyhedvgygvseglaskalslekarkeavtdglkralrsfgnalgnciLdKdylrslnklprqlplevdltkakrqdlepsveearynsc
interface signature	RYKE/RAVKEL/RAVYK/RVYKEK/RVKK/RAVKE/RVYKEL/RAVK/RVKE/RVKEL/VLK

Estimated binding specificities ?

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# IC=32.628 IC/col=0.816 n_of_columns=40

specificity:

A |   0   9  21   0   0   0  24   0   0  14  24   0   0   4  24   4   0  12  24   0   0   0  21   0   0  12  24   0   0   4  24   0   0   0  20   0  12   7  24   0
C |   0   9  21   0   0   0  24   0   0  16  24   0   0   4  24   7   0  12  24  96  96   0  21   0   0  12  24   0   0   4  24   0   0   0  19   0  12   8  24   0
G |   0   9  23   0   0   0  24   0   0  14  24   0   0   4  24   4   0  12  24   0   0   0  21   0   0  12  24   0   0   7  24   0   0   0  19   0  12   7  24   0
T |  96  69  31  96  96  96  24  96  96  52  24  96  96  84  24  81  96  60  24   0   0  96  33  96  96  60  24  96  96  81  24  96  96  96  38  96  60  74  24  96

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updated Tue Nov 29 13:02:16 2022