5x6m_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SMAD5-MH1 IN COMPLEX WITH A COMPOSITE DNA SEQUENCE
reference	Wang et al. 'Nucleic 43 9051 2015
source	Mus musculus
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	SMAD MH1 domain;
reference complex	6fzs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6m_E interface=61,63,65,70, pavkrllgwkqgdeeekwaekavdalvkklkkkkgameelekalsspgqpskcvtiprslDgRlQvshrKglphviycrvwrwpdlqshhelkpldicefpfgskqkevcinpyhykrves > 5x6m_F interface=61,63,65,70, pavkrllgwkqgdeeekwaekavdalvkklkkkkgameelekalsspgqpskcvtiprslDgRlQvshrKglphviycrvwrwpdlqshhelkpldicefpfgskqkevcinpyhykrves
interface signature	DRQK/DRQK

Estimated binding specificities ?

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# IC=9.327 IC/col=0.777 n_of_columns=12

specificity:

A |  96   0  87   0  24  24  24  17   0   8   0  87
C |   0   0   1  96  24  24  24  63   0  17  96   0
G |   0  96   8   0  24  24  24   8  96  17   0   9
T |   0   0   0   0  24  24  24   8   0  54   0   0

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updated Sat Dec 16 06:53:30 2023