5x6d_GH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
reference	Zhu et al. 'Protein 8 308 2017
source	Listeria monocytogenes
experiment	X-ray (resolution=2.94, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6d_G interface=180,182,183,186, aqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvsRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5x6d_H interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSAR/HSASR

Estimated binding specificities ?

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# IC=7.074 IC/col=0.707 n_of_columns=10

specificity:

A |  81  85  11  96  24  24   6   0   6   5
C |   5   5  75   0  24  24   5   0   5  11
G |   5   6   5   0  24  24   5  96   5   5
T |   5   0   5   0  24  24  80   0  80  75

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updated Sat Dec 16 06:51:40 2023