5w5y_ABPQ : 3D-footprint complex

structure name	RNA POLYMERASE I INITIAL TRANSCRIBING COMPLEX
experiment	NMR
reference complex	5w5y_P 5w5y_Q
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5w5y_A interface=403,514,935,936,940,1398,1414, mdiskpvgseitsvdfgiltakeirnlsakqitnptvldnlghpvsgglydlalgaflrnlcstcgldekfcpghqghielpvpcynplffnqlyiylrasclfchhfrlksvevhryacklrllqyglidesykldeitldisstllnelkskrseyvdmaiakalsdgrttergsftatvnderkklvhefhkkllsrgkcdncgmfspkfrkdgftkifetalnekqitnnrvkgstyilstevknildtvfrkeqcvlqyvfhsrpnlsrklvkadsffmdvlvvpptrfrlpsklgeevhensqnqllskvlttsllirdlnddlsklqkdkvsledrrvifsrlmnafvtiqndvnafidstkaqkvpipgvkqalekkeglfrkhmmgkrvnyaaRsvispdpnietneigvppvfavkltypepvtayniaelrqavingpdkwpgatqiqnedgslvsligmsveqrkalanqlltpssnvsthtlnkkvyrhiknrdvvlmnrQptlhkasmmghkvrvlpnektlrlhyantgaynadfdgdemnmhfpqnenaraealnlantdsqyltptsgspvrgliqdhisagvwltskdsfftreqyqqyiygcirpedghttrskivtlpptifkpyplwtgkqiittvllnvtppdmpginlisknkikneywgkgslenevlfkdgallcgildksqygaskygivhslhevygpevaakvlsvlgrlftnyitataftcgmddlrltaegnkwrtdilktsvdtgreaaaevtnldkdtpaddpellkrlqeilrdnnksgildavtsskvnaitsqvvskcvpdgtmkkfpcnsmqamalsgakgsnvnvsqimcllgqqalegrrvpvmvsgktlpsfkpyetdamaggyvkgrfysgikpqeyyfhcmagreglidtavkTSrsgYlqrcltkqlegvhvsydnsirdadgtlvqfmyggdaiditkeshmtqfefcldnyyallkkynpsaliehldvesalkyskktlkyrkkhsphykqsvkydpvlakynpakylgsvsenfqdklesfldknsklfkssdgvnekkfralmqlkymrslinpgeavgiiasqsvgepstqmnvtlgiprlreivmtasaaiktpqmtlpiwndvsdeqadtfcksiskvllsevidkvivtettaarsyvihmrffdnneyseeydvskeelqnvisnqfihlleaaivkeikkqknmnkvqrdrqsaiishhrfitkynfddesgkwcefklelaadtekllmvniveeicrksiirqiphidrcvhpepengkrvlvtegvnfqamwdqeafidvdgitsndvaavlktygveaarntivneinnvfsryaisvsfrhldliadmmtrqgtylafnRqgmetstssfmkmsyEttcqfltkavldnereqldspsarivvgklnnvgtgsfdvlakvpna > 5w5y_B interface=447,463,464,492,495,496,801, rtadfrtleresrfinppkdksafpllqeavqphigsfnaltegpdggllnlgvkdigekvifdgkplnsnsgylgnklsvsveqvsiakpmsndgvssaverkvypsesrqrltsyrgklllklkwsvnngeenlfevrdcgglpvmlqsnrchlnkmspyelvqhkeesdeiggyfivngieklirmlivqrrnhpmaiirpsfanrgasyshygiqirsvrpdqtsqtnvlhylndgqvtfrfswrkneylvpvvmilkalchtsdreifdgiigndvkdsfltdrlelllrgfkkryphlqnrtqvlqylgdkfrvvfqaspdqsdlevgqevldrivlvhlgkdgsqdkfrmllfmirklyslvagecspdnpdatqhqevllggflygmilkekideylqniiaqvrmdinrgmainfkdkrymsrvlmrvnenigskmqYflstgnlvsqsgldlQQvsgytvvaekinfyrfishfrmvhrgsFfaQLktttvrkllpeswgflcpvhtpdgspcgllnhfahkcristqqsdvsripsilyslgvapashtfaagpslccvqidgkiigwvsheqgkiiadtlrywkvegktpglpidleigyvppstrgqypglylfgghsrmlrpvrylpldkedivgpfeqvymniavtpqeiqnnvhthveftptnilsilanltpfsdfnqsprnmyqcqmgkqtmgtpgvalchrsdnklyrlqtgqtpivkanlyddygmdnfpngfnavvavisytgydmddamiinksadergfgygtmyktekvdlalnrnRgdpitqhfgfgndewpkewlekldedglpyigtyveegdpicayfddtlnktkiktyhssepayieevnligdesnkfqelqtvsikyrirrtpqigdkfssrhgqkgvcsrkwptidmpfsetgiqpdiiinphafpsrmtigmfveslagkagalhgiaqdstpwifneddtpadyfgeqlakagynyhgnepmysgatgeelradiyvgvvyyqrlrhmvndkfqvrstgpvnsltmqpvkgrkrhggirvgemerdalighgtsfllqdrllnssdytqasvcrecgsilttqqsvprigsistvccrrcsmrfedakklltedgekifiddsqiwedgqgnkfvggnetttvaipfvlkyldselsamgirl > 5w5y_P interface=121,201, kligheakllflksfqfilkrqirwlitemrfpkefehvakiiwlkilktindqpqeelklqlhmtstisilylasthlslpvytcdyikwictakmpyfqaseilpkswriqlpnyyvsIlegsispfngqlynkialtcgmihfkeffnseiscqglllklvmqcalppefyfytkqviefeetdirnltlwertderHtgrvsnhaelrvlsyfmltinwmlsfdrdrqyplkwilsltesltqrtttsesigrnivkvvypdkptssdyfqwseeetleflkwmekqflptqtsmemtidqkiarrklykifpldredthqltfiedlqeryakqtpffpparkeaigrllthiasqllvdfaiskeqlkdcisriknaclhr > 5w5y_Q interface=10,11,204, mfevpitltNRkfaqrrklkyqyinyisrrfdrisksdeerkfwkkyekpeksfeiwrtvssqnkqpinkqkmtyhnfkkiekiplrkmeipllhctkenklyfqsisrgleplktstsevrnyrtrhivtltdllhlnvsrhnwslaykifatliripgvqikslwgigveildnlsnsssgldflqwmcqiyssksrfvqnInyrsivppfqtgsrthtakfaitylwsslincqksmeptendllqelidkisewvltppfmedaevwfiyaschllkadtlsrqfvndnknndligldrdikinqvikhihyvrtflkicldkggfavpsrlienqlksfesrly
interface signature	RQTSYRE/YQQFQLR/IH/NRI

Estimated binding specificities ?

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# IC=9.190 IC/col=0.255 n_of_columns=36

specificity:

A |   0   0  24  24  24  24  24  24  24  96  24   0  24  24  24  24   8  24  24  24  24  24  24  24  24  24  24  24  24  11   0  24  24  24  96   8
C |   0   0  24  24  24  24  24  24  24   0  24   0  24  24  24  24  11  24  24  24  24  24  24  24  24  24  24  24  24   8  87  24  24  24   0  72
G |   0   0  24  24  24  24  24  24  24   0  24  96  24  24  24  24   8  24  24  24  24  24  24  24  24  24  24  24  24   8   0  24  24  24   0   8
T |  96  96  24  24  24  24  24  24  24   0  24   0  24  24  24  24  69  24  24  24  24  24  24  24  24  24  24  24  24  69   9  24  24  24   0   8

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updated Sat Dec 16 06:33:06 2023