interface graph thumbnail
legend  pdf

structure nameKAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A HEMI CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE (KBS)
(Transcriptional regulator Kaiso)
referenceMartinez-Yamout et al. Biochemistry 57 2109 2018
sourceHomo sapiens
experimentX-ray (resolution=2.05, R-factor=0.165)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex2lt7_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSREYKNYQFRY

Estimated binding specificities ?

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# IC=8.998 IC/col=0.818 n_of_columns=11 specificity:   
A |   0  24  24  14   0   0  16   0   7   0  96
C |   0  24  24   7  81  96   7   0  75   0   0
G |  96  24  24   7   7   0   7  96   7  96   0
T |   0  24  24  68   8   0  66   0   7   0   0
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updated Mon Dec 18 13:44:13 2023