| structure name | PRDM9-ALLELE-C ZNF8-13 (PR domain zinc finger protein 9) |
| reference | Patel et al. 'J. 292 15994 2017 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.42, R-factor=0.176) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| reference complex | 5ei9_F |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NSHRRDSHDSNWSVRDSNSHR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 0 24 84 96 0 0 2 0 7 96 7 0 0 0 0 0 7 3 C | 0 0 0 24 3 0 96 0 73 0 79 0 73 7 0 0 0 0 8 81 G | 96 96 96 24 3 0 0 96 3 0 7 0 9 1 96 96 96 96 11 9 T | 0 0 0 24 6 0 0 0 18 96 3 0 7 88 0 0 0 0 70 3scan! |
Dendrogram of similar interfaces ?
matrix formatSGHGRGRGDC--SCHG----DCSANA----WC--SCVG--RGDCSGNA------STHGRG-- L +-----------5v3g_A +--2 --------------------ECSGKGRG--DG--YCKG--RGQA--TC----RASCDCVT-- L ! ! +-------5k5h_A +--------3 +---1 ----------------------------NGKT--WTKG------HTHGRGTGTTACNAKGRG L ! ! +-------1tf3_A +-4 ! ------------------RGSTYGYC----QC--TGSTRGYT-------------------- ! ! +--------------4is1_C +--5 ! --------QA----TCRG--RGYCRT------------------------------------ L ! ! +-----------------------7txc_E --6 ! --------------------NTSTNAVT--QTSTSGKG--RG-------------------- L ! +------------------------6u9q_A ! ------QT--AG--KGRG--RGDCKG------------------------------------ L +---------------------------7n5w_A |
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updated Mon Dec 18 13:42:43 2023