| structure name | X-RAY CRYSTAL STRUCTURE OF MARINITOGA PIEZOPHILA ARGONAUTE IN COMPLEX WITH 5' OH GUIDE RNA AND TARGET DNA (Argonaute protein) |
| reference | Doxzen et al. 'PLoS 12 e0177097 2017 |
| source | Marinitoga piezophila |
| experiment | X-ray (resolution=3.20, R-factor=0.218) |
| structural superfamily | Ribonuclease H-like; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KTKFFLYT |
Estimated binding specificities ?
| contact |  |
A | 0 16 24 24 24 0 24 6 8 64 0 0 C | 0 13 24 24 24 0 24 6 6 13 96 96 G | 96 13 24 24 24 0 24 75 0 13 0 0 T | 0 54 24 24 24 96 24 9 82 6 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatKG--TT------------------------KCFC--------------------------FALG--YCTC-- L +-----------5ux0_A +-------2 --TGRA--KTQTKT--------NCYC--TG--LTYTYGHTNG--------RA----NT----------KA-- L ! ! +--------6qzk_A ! +--1 ----LA--------PTMT--WT--RTITNT--HCRG--NG------------------DGRG--RGFGAGFG ! +--------4n41_B +---------5 ----KGYARC--------------------SA--YA--------RT--RC------DCRA----SA--LAPA L ! ! +----------------6d92_F ! ! +-3 ------------------YA--------RA----FAYTDTNT------------------------FTRA-- +-6 +-4 +----------------6t5t_A ! ! ! --------------------------NT-------------------------------------------- ! ! +------------------5g5t_A +-7 ! ----------------------------------------------NG------------------------ ! ! +-----------------------------4h8k_A --8 ! ------------------------------------------NTRG-------------------------- L ! +-----------------------------2qkb_A ! ----------------------------------------------------QGTG---------------- +-----------------------------6dop_A |
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updated Tue Dec 19 11:25:59 2023