interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF HISTONE-BASED CHROMATIN IN ARCHAEA
(DNA-binding protein HMf-2)
referenceBhattacharyya et al. Science 357 609 2017
sourceMethanothermus fervidus
experimentX-ray (resolution=4.00, R-factor=0.216)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4; TATA box binding protein associated fac 05;
multimeric complexes5t5k_ABCDEF
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RA                                             +6t7a_C    
                       +-----------------------------1 
  ----RT             +-3                             +7lyb_G    
                     ! ! 
  RAET--           +-4 +-----------------------------4ne1_p    
                   ! ! 
  ----RT         +-5 +-----------------------------1u35_G    
                 ! ! 
  ----RT       +-6 +-----------------------------7lya_E    
               ! ! 
  ----RT     --7 +-----------------------------7wlr_E    
               ! 
  --ITRA       !                            +7k78_E    
               +----------------------------2 
  ----RT                                    +7zs9_e    
             

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updated Tue Dec 19 11:18:01 2023