5ola_CDF : 3D-footprint complex

structure name	STRUCTURE OF MITOCHONDRIAL TRANSCRIPTION ELONGATION COMPLEX IN COMPLEX WITH ELONGATION FACTOR TEFM
reference	Schwinghammer et al. Cell 171 1082 2017
source	HOMO SAPIENS
experiment	X-ray (resolution=3.90, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	5ola_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ola_C interface=8, penrflrKllkpdiererlkavnsiisivfgtrriawahldrkltvldwqqsdrwslmrgiysssvyleeissiiskmpkadfyvlektglsiqnsslfpillhfhimeamlyallnktfaqdgqhqvlsmnrnavgkhfelmigdsrtsgkelvkqflfdsilkadprvffpsdkivhyrqmflstelqrveelydsllqaiafyelavfd > 5ola_D interface= lrkllkpDiererlkavnsiisivfgtrriawahldrkltvldwqqsdrwslmrgiysssvyleeissiiskmpkadfyvlektglsiqnsslfpillhfhimeamlyallnktfaqdgqhqvlsmnrnavgkhfelmigdsrtsgkelvkqflfdsilkadprvffpsdkivhyrqmflstelqrveelydsllqaiafyelavfd > 5ola_F interface=276,554,558,583,585,587,772,776,779,781,784,789,884, qlsgqqqrllaffkcclltdqlplahhllvvhhgqrqkrklltldmynavmlgwarqgafkelvyvlfmvkdagltpdllsyaaalqcmgrqdqdagtiercleqmsqeglklqalftavllseedratvlkavhkvkptfslppqlpppvntskllrdvyakdgrvsypklhlplktlqclfekqlhmelasrvcvvsvekptlpskevkharktlktlrdqwekalcralretknrlerevyegrfslypflcllderevvrmllqvlqalpaQgesfttlarelsartfsrhvvqrqrvsgqvqalqnhyrkylcllasdaevpepclprqywealgapealreqpwplpvqmelgkllaemlvqatqmpcsldrssrlvpvlyhvysfrnvqqigilkphpayvqllekaaeptltfeavdvpmlcpplpwtsphsgafllsptklmrtvegatqhqelletcpptalhgaldaltqlgncawrvngrvldlvlqlfqakgcpqlgvpappseapqppeahlphsaaparkaelrrelahcqkvaremhSlraEalyrlslaqhlrdrvfwlphnmdfRgRtYpcpphfnhlgsdvarallefaqgrplgphgldwlkihlvnltglkkreplrkrlafaeevmddildsadqpltgrkwwmgaeepwqtlaccmevanavrasdpaayvshlpvhqdgscnglqhyaalgrdsvgaasvnlepsdvpqdvysgvaaqvevfrrqdaqrgmrvaqvlegfitrkvvkQtvmTvvYgVtrYggrlQiekrlrelsdfpqefvweashylvrqvfkslqemfsgtraiqhwltesarlishmgsvvewvtplgvpviqpyrldsrkpntrkqkngfppnfiHsldsshmmltalhcyrkgltfvsvhdcywthaadvsvmnqvcreqfvrlhsepilqdlsrflvkrfcsepqkileasqlketlqavpkpgafdleqvkrstyffs
interface signature	K/D/QSERRYQTYVYQH

Estimated binding specificities ?

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# IC=5.418 IC/col=0.677 n_of_columns=8

specificity:

A |   0   0   0   9  24  24   9   9
C |   0   0   0  69  24  24   9  69
G |  96   0  96   9  24  24  69   9
T |   0  96   0   9  24  24   9   9

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updated Sat Dec 16 05:10:50 2023