5ola_ABE : 3D-footprint complex

structure name	STRUCTURE OF MITOCHONDRIAL TRANSCRIPTION ELONGATION COMPLEX IN COMPLEX WITH ELONGATION FACTOR TEFM
reference	Schwinghammer et al. Cell 171 1082 2017
source	HOMO SAPIENS
experiment	X-ray (resolution=3.90, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	5ola_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ola_A interface= penrflrkllkpdiererlkavnsiisivfgtrriawahldrkltvldwqqsdrwslmrgiysssvyleeissiiskmpkadfyvlektglsiqnsslfpillhfhimeamlyallnktfaqdgqhqvlsmnrnavgkhfelmigdsrtsgkelvkqflfdsilkadprvffpsdkivhyrqmflstelqrveelydsllqaiafyelavfd > 5ola_B interface= lrkllkpdiererlkavnsiisivfgtrriawahldrkltvldwqqsdrwslmrgiysssvyleeissiiskmpkadfyvlektglsiqnsslfpillhfhimeamlyallnktfaqdgqhqvlsmnrnavgkhfelmigdsrtsgkelvkqflfdsilkadprvffpsdkivhyrqmflstelqrveelydsllqaiafyelavfd > 5ola_E interface=276,539,554,558,583,585,587,772,776,779,781,784,789,806,872,884, qlsgqqqrllaffkcclltdqlplahhllvvhhgqrqkrklltldmynavmlgwarqgafkelvyvlfmvkdagltpdllsyaaalqcmgrqdqdagtiercleqmsqeglklqalftavllseedratvlkavhkvkptfslppqlpppvntskllrdvyakdgrvsypklhlplktlqclfekqlhmelasrvcvvsvekptlpskevkharktlktlrdqwekalcralretknrlerevyegrfslypflcllderevvrmllqvlqalpaQgesfttlarelsartfsrhvvqrqrvsgqvqalqnhyrkylcllasdaevpepclprqywealgapealreqpwplpvqmelgkllaemlvqatqmpcsldrssrlvpvlyhvysfrnvqqigilkphpayvqllekaaeptltfeavdvpmlcpplpwtsphsgafllsptklmrtvegatqhqelletcpptalhgaldaltqlgncawrvngrvldlvlqlfqakgcpqlgvpappseapqppeahlphsaaparkaelRrelahcqkvaremhSlraEalyrlslaqhlrdrvfwlphnmdfRgRtYpcpphfnhlgsdvarallefaqgrplgphgldwlkihlvnltglkkreplrkrlafaeevmddildsadqpltgrkwwmgaeepwqtlaccmevanavrasdpaayvshlpvhqdgscnglqhyaalgrdsvgaasvnlepsdvpqdvysgvaaqvevfrrqdaqrgmrvaqvlegfitrkvvkQtvmTvvYgVtrYggrlQiekrlrelsdfpqefvWeashylvrqvfkslqemfsgtraiqhwltesarlishmgsvvewvtplgvpviqpyrldsrkpntRkqkngfppnfiHsldsshmmltalhcyrkgltfvsvhdcywthaadvsvmnqvcreqfvrlhsepilqdlsrflvkrfcsepqkileasqlketlqavpkpgafdleqvkrstyffs
interface signature	//QRSERRYQTYVYQWRH

Estimated binding specificities ?

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# IC=4.131 IC/col=0.516 n_of_columns=8

specificity:

A |   0   0   0  24  24  24  21  21
C |   0   0   0  24  24  24  23  33
G |  96   0  96  24  24  24  42  21
T |   0  96   0  24  24  24  10  21

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updated Sat Dec 16 05:11:24 2023