5lcl_AB : 3D-footprint complex

structure name	STRUCTURE OF THE RAD14 DNA-BINDING DOMAIN IN COMPLEX WITH C8- AMINOFLUORENE- GUANINE CONTAINING DNA
reference	Schneider et al. Chembiochem 18 1379 2017
source	SACCHAROMYCES CEREVISIAE S288C
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	5a3d_A 5lcl_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5lcl_A interface=43,46,53,69,71,75, apkciechiniemdpvlhdvfklqvckqcskehpekyalltkTecKedyfltDpelndedlfhrlekpNpHsgtFarmqlfvrceveafafkkwggeegldeewqrreegkah > 5lcl_B interface=43,46,53,75,107, apkciechiniemdpvlhdvfklqvckqcskehpekyalltkTecKedyfltDpelndedlfhrlekpnphsgtFarmqlfvrceveafafkkwggeegldeewqrReegkahr
interface signature	TKDNHF/TKDFR

Estimated binding specificities ?

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# IC=3.398 IC/col=0.283 n_of_columns=12

specificity:

A |   0  14  24  22  24  24  24  24  24   7  24  96
C |  96  14  24  14  24  24  24  24  24   7  24   0
G |   0  32  24   9  24  24  24  24  24  16  24   0
T |   0  36  24  51  24  24  24  24  24  66  24   0

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updated Sat Dec 16 03:11:03 2023