interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF CAULOBACTER CRESCENTUS VAPBC1 BOUND TO OPERATOR DNA
(VAPB FAMILY PROTEIN)
referenceBrodersen et al. 'Nucleic 45 2875 2017
sourceCAULOBACTER CRESCENTUS
experimentX-ray (resolution=2.70, R-factor=0.181)
structural superfamilyAbrB/MazE/MraZ-like;
sequence familySpoVT / AbrB like domain;
multimeric complexes5l6l_ADEH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureFSNSR

Estimated binding specificities ?

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# IC=3.142 IC/col=0.393 n_of_columns=8 specificity:   
A |  13  24  24  24  24  54   0   0
C |  13  24  24  24  24  16  96   0
G |  13  24  24  24  24  13   0  96
T |  57  24  24  24  24  13   0   0
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updated Tue Dec 19 10:50:33 2023