5ke9_A : 3D-footprint complex

structure name	MOUSE KLF4 E446P ZNF1-3 AND TPG/CPA SEQUENCE DNA COMPLEX STRUCTURE (Krueppel-like factor 4)
reference	Hashimoto et al. 'Nucleic 44 10177 2016
source	Mus musculus
experiment	X-ray (resolution=2.34, R-factor=0.217)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	2wbs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ke9_A interface=18,20,21,48,49,50,51,54,76,78,79, rtathtcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRSDPltRhyrkhtghrpfqcqkcdrafsRsDHlalhmkrhf
interface signature	KSHRSDPRRDH

Estimated binding specificities ?

readout + contact

# IC=9.428 IC/col=1.048 n_of_columns=9

specificity:

A |   9  48   0  96   0  96   0   0   0
C |  19  20  96   0  96   0  96  96   9
G |  57   9   0   0   0   0   0   0   1
T |  11  19   0   0   0   0   0   0  86

scan!

home
updated Mon Dec 18 13:08:55 2023