5k5r_ABCDEF : 3D-footprint complex

structure name	ASPA-32MER DNA,CRYSTAL FORM 2
reference	Science 349 1120 2015 X-RAY DIFFRACTION
source	SULFOLOBUS SP. NOB8H2
experiment	X-ray (resolution=3.09, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5k5q_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5k5r_A interface=37,38,39,41,42,45, stdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k5r_B interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k5r_C interface=40,41,42,45, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k5r_D interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvev > 5k5r_E interface=40,41,42,45, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k5r_F interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq
interface signature	YQTIQR/KYQTIQR/YQTQ/KYQTIQR/YQTQ/KYQTIQR

Estimated binding specificities ?

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# IC=33.306 IC/col=1.148 n_of_columns=29

specificity:

A |  88   3   0  96   4   0   4   0   0   0  90   0   0  96   1   1   3  74   0  96   3  96   0  86   0   0  84  86  96
C |   3   7   0   0   1   0  90   0  96   0   1   0   0   0   3   1   1  11  96   0   1   0   0   3   0  23   3   3   0
G |   4  15   0   0   1  96   1   0   0   0   4   0  96   0   0   4   0  10   0   0   3   0  96   3  96   0   6   1   0
T |   1  71  96   0  90   0   1  96   0  96   1  96   0   0  92  90  92   1   0   0  89   0   0   4   0  73   3   6   0

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updated Sat Dec 16 03:07:10 2023