interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF PYRENE- AND PHENANTHRENE-MODIFIED DNA IN COMPLEX WITH THE BPUJ1 ENDONUCLEASE BINDING DOMAIN
(Restriction endonuclease R.BpuJI)
referenceLangenegger et al. 'Nucleic 44 7079 2016
sourceBacillus pumilus
experimentX-ray (resolution=2.67, R-factor=0.203)
reference complex2vla_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKKTNEKETSQ

Estimated binding specificities ?

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# IC=7.552 IC/col=1.079 n_of_columns=7 specificity:   
A |   0  96   0   0   0   0  19
C |  76   0  96   0   0   0  19
G |   0   0   0  96  96  96  20
T |  20   0   0   0   0   0  38
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updated Mon Dec 18 12:53:23 2023