5gpc_ABCD : 3D-footprint complex

structure name	STRUCTURAL ANALYSIS OF FATTY ACID DEGRADATION REGULATOR FADR FROM BACILLUS HALODURANS
reference	Park et al. 'Nucleic 45 4244 2017
source	Bacillus halodurans
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	5gpc_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5gpc_A interface=27,37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_B interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh > 5gpc_C interface=37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqvskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_D interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh
interface signature	VADTYL/VADTYL/ADTYL/VADTYL

Estimated binding specificities ?

contact

# IC=12.604 IC/col=0.788 n_of_columns=16

specificity:

A |   3   3  92  96   3  24  84   0  24  24   0   3  11  24   0   3
C |   0   3   3   0   3  24   3   0  24  24   0   3  72  24   0   3
G |   3  87   0   0   6  24   6  96  24  24   0   3  10  24   0   6
T |  90   3   1   0  84  24   3   0  24  24  96  87   3  24  96  84

scan!

home
updated Sat Dec 16 01:27:19 2023