interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRANSCRIPTION FACTOR FLI1 IN COMPLEX WITH A 10-MER DNA ACCGGAAGTG
(Friend leukemia integration 1 transcription factor)
referenceTsodikov et al. Biochemistry 54 7365 2015
sourceHomo sapiens
experimentX-ray (resolution=3.45, R-factor=0.225)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyEtsdomain;
multimeric complexes5jvt_AD 6vg8_AD 6vgd_AD 6vge_AD 6vgg_AD
reference complex4iri_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDKRARY

Estimated binding specificities ?

contactlogo
# IC=5.807 IC/col=0.968 n_of_columns=6 specificity:   
A |  13  13   0   0   0   0
C |  54  13   0  96  96   0
G |  16  13   0   0   0  96
T |  13  57  96   0   0   0
scan!

home
updated Mon Dec 18 12:37:21 2023