interface graph thumbnail
legend  pdf

structure nameGLUCOCORTICOID RECEPTOR DNA BINDING DOMAIN - CCL2 NF-KB RESPONSE ELEMENT COMPLEX
referenceOrtlund et al. 'Nat 9 1337 2018
sourceHomo sapiens
experimentX-ray (resolution=2.20, R-factor=?)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
reference complex5e69_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKVRR/VFA

Estimated binding specificities ?

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# IC=6.268 IC/col=0.784 n_of_columns=8 specificity:   
A |  96  96  16  24   8   6   0  68
C |   0   0  13  24   6  75  96  13
G |   0   0   6  24   0   6   0   6
T |   0   0  61  24  82   9   0   9
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updated Sat Dec 16 00:55:53 2023