interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH 5-(N-(10- HYDROXYDECANOYL)-AMINOPENTENYL)-2'-DEOXYURIDINE-TRIPHOSPHATE
(DNA polymerase I, thermostable)
referenceHottin et al. Chemistry 23 2109 2017
sourceThermus aquaticus
experimentX-ray (resolution=1.80, R-factor=0.194)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A; Taq polymerase, exonuclease;
reference complex6fbc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTRNNQH

Estimated binding specificities ?

contactlogo
# IC=2.225 IC/col=0.556 n_of_columns=4 specificity:   
A |  20   6   0   6
C |   6  57   7  27
G |  57   6  89   2
T |  13  27   0  61
scan!

home
updated Mon Dec 18 12:34:43 2023