5dny_BD : 3D-footprint complex

structure name	STRUCTURE OF THE ATPRS-MRE11/RAD50-DNA COMPLEX
reference	'Embo 35 743 2016 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
experiment	X-ray (resolution=3.11, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	5dny_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dny_B interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegekemsnlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking > 5dny_D interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegelnynlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking
interface signature	SR/SR

Estimated binding specificities ?

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# IC=4.526 IC/col=0.251 n_of_columns=18

specificity:

A |   6   5  24  24  24  20  91  24  24  24  24  24  24  24  24  24  56   5
C |   5   5  24  24  24  10   5  24  24  24  24  24  24  24  24  24  15  91
G |  80   1  24  24  24  51   0  24  24  24  24  24  24  24  24  24  25   0
T |   5  85  24  24  24  15   0  24  24  24  24  24  24  24  24  24   0   0

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updated Sat Dec 16 00:39:58 2023