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legend  pdf

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF MCM2-7 DOUBLE HEXAMER ON DSDNA
(DNA REPLICATION LICENSING FACTOR MCM7)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyNucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
sequence familyMCM2/3/5 family; ATPase family associated with various ce; Magnesium chelatase, subunit ChlI 1231;
multimeric complexes5bk4_234567ABCDEF 5u8s_25 5u8s_3467 6f0l_234567ABCDEF 6rqc_234567ABCDE 6sko_234567 6u0m_25 6u0m_3467 6wgi_346 6wgi_79BCDE 7p30_234567ABCDEF
redundant complexes5u8s 6f0l 6rqc 6sko 6u0m 6wgi 7p30
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ------------------------------RT------                 +-----------------------------6u0m_5    
                                                       +-2 
  ------------------------------KT--RT--             +-3 +-----------------------------6raw_5    
                                                     ! ! 
  ----------------------------VT--------           +-4 +-----------------------------6raw_3    
                                                   ! ! 
  --------------------------------DA----         +-5 +-----------------------------6u0m_3    
                                                 ! ! 
  ------------------------------------WT       +-6 +-----------------------------6u0m_2    
                                               ! ! 
  ------------------------------KA------     --7 +-----------------------------5v8f_2    
                                               ! 
  RTETKTRT--------MT--RTFT--RT----------   L   !       +---------------------4pog_H    
                                               +-------1 
  ------TTATNTTTFT--AT--FTNT------------   L           +---------------------6bhx_B    
                                             

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updated Tue Dec 19 10:04:57 2023