interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF MCM2-7 DOUBLE HEXAMER ON DSDNA
(DNA REPLICATION LICENSING FACTOR MCM6)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyNucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
sequence familyMCM2/3/5 family;
multimeric complexes5bk4_234567ABCDEF 5u8s_25 5u8s_3467 6f0l_234567ABCDEF 6rqc_234567ABCDE 6sko_234567 6wgi_346 6wgi_79BCDE 7p30_234567ABCDEF
redundant complexes5u8s_6 6f0l_E 6rqc_6 6sko 6wgi 7p30
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --------------------------RT----                 +-----------------------------6u0m_5    
                                                 +-1 
  ------------------------VT------             +-2 +-----------------------------6raw_3    
                                               ! ! 
  --------------------------KT--RT           +-3 +-----------------------------6raw_5    
                                             ! ! 
  ----------------------------DA--         +-4 +-----------------------------6u0m_3    
                                           ! ! 
  --------------------------KA----       +-5 +-----------------------------5v8f_2    
                                         ! ! 
  RTETKT--RTMTRTFT------RT--------   L --6 +-----------------------------4pog_H    
                                         ! 
  ------DT------QCHCFAKT----------   L   +-----------------------------1qzh_E    
                                       

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updated Tue Dec 19 10:03:18 2023