interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF MCM2-7 DOUBLE HEXAMER ON DSDNA
(DNA REPLICATION LICENSING FACTOR MCM3)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyNucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
sequence familyMCM2/3/5 family; Magnesium chelatase, subunit ChlI 1250;
multimeric complexes5bk4_234567ABCDEF 6f0l_234567ABCDEF 6sko_234567 6wgi_346 6wgi_79BCDE 7p30_234567ABCDEF
redundant complexes7p30_B 6f0l 6sko 6wgi
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ----------------------------DA----                   +-----------------------------6u0m_3    
                                                     +-1 
  ----------------------VT----------               +-2 +-----------------------------6raw_3    
                                                   ! ! 
  --------------------------RT------             +-3 +-----------------------------6u0m_5    
                                                 ! ! 
  ------------------------KT------WT           +-4 +-----------------------------6u0m_2    
                                               ! ! 
  --------------------------KT--RT--         +-5 +-----------------------------6raw_5    
                                             ! ! 
  --------------------------KA------       +-6 +-----------------------------5v8f_2    
                                           ! ! 
  TTATNTTTFTATFTNT------------------   L --7 +-----------------------------6bhx_B    
                                           ! 
  ----------------KGKGEG------------       +-----------------------------3u58_C    
                                         

home
updated Tue Dec 19 10:01:13 2023