5b43_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ACIDAMINOCOCCUS SP. CPF1 IN COMPLEX WITH CRRNA AND TARGET DNA (CRISPR-associated endonuclease Cpf1)
reference	Nishimasu et al. Cell 165 949 2016
source	Acidaminococcus sp. BV3L6
experiment	X-ray (resolution=2.80, R-factor=0.222)
redundant complexes	5kk5
reference complex	5xh6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5b43_A interface=164,536,539,545,549,596,600,601,604, mtqfegftnlyqvsktlrfelipqgktlkhiqeqgfieedkarndhykelkpiidriyktyadqclqlvqldwenlsaaidsyrkekteetrnalieeqatyrnaihdyfigrtdnltdainkrhaeiykglfkaelfngkvlkqltttehenallrsfdkftTyfsgfyenrknvfsaedistaiphrivqdnfpkfkenchiftrlitavpslrehfenvkkaigifvstsieevfsfpfynqlltqtqidlynqllggisreagtekikglnevlnlaiqkndetahiiaslphrfiplfkqilsdrntlsfileefksdeeviqsfckyktllrnenvletaealfnelnsidlthifishkkletissalcdhwdtlrnalyerriseltgkitksakekvqrslkhedinlqeiisaagkelseafkqktseilshahaaldqplpttlkkqeekeilksqldsllglyhlldwfavdesnevdpefsarltgiklemepslsfynkarnyatkkpysvekfklnfqmpTlaSgwdvnKeknNgailfvknglyylgimpkqkgrykalsfeptektsegfdkmyydyfPdaaKMipKcstqlkavtahfqthttpillsnnfiepleitkeiydlnnpekepkkfqtayakktgdqkgyrealckwidftrdflskytkttsidlsslrpssqykdlgeyyaelnpllyhisfqriaekeimdavetgklylfqiynkdfakghhgkpnlhtlywtglfspenlaktsiklngqaelfyrpksrmekmlnkklkdqktpipdtlyqelydyvnhrlshdlsdearallpnvitkevsheiikdrrftsdkfffhvpitlnyqaanspskfnqrvnaylkehpetpiigidrgernliyitvidstgkileqrslntiqqfdyqkkldnrekervaarqawsvvgtikdlkqgylsqviheivdlmihyqavvvlenlavyqqfekmlidklnclvlkdypaekvggvlnpyqltdqftsfakmgtqsgflfyvpapytskidpltgfvdpfvwktiknhesrkhflegfdflhydvktgdfilhfkmnrnlsfqrglpgfmpawdivfeknetqfdakgtpfiagkrivpyrdlypanelialleekgivfrdgsnilpkllenddshaidtmvalirsvlqmrnsnaatgedyinspvrdlngvcfdsrfqnpewpmdadangayhialkgqlllnhlkeskdlklqngisnqdwlayiqelrn
interface signature	TTSKNPKMK

Estimated binding specificities ?

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# IC=3.555 IC/col=0.889 n_of_columns=4

specificity:

A |   0  96  76  38
C |   0   0   0  20
G |   0   0  20  19
T |  96   0   0  19

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updated Mon Dec 18 12:12:01 2023