5awh_B : 3D-footprint complex

structure name	RHODOBACTER SPHAEROIDES ARGONAUTE IN COMPLEX WITH GUIDE RNA/TARGET DNA HETERODUPLEX (Uncharacterized protein)
reference	Murakami et al. 'Nat 7 11846 2016
source	Rhodobacter sphaeroides
experiment	X-ray (resolution=2.00, R-factor=0.187)
structural superfamily	Ribonuclease H-like;
sequence family	Piwi domain 460;
reference complex	6d92_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5awh_B interface=25,43,188,272,284,434,437,438,441,475,484,549,583,608,625,627,628,630,665,672,673, qlvsngfevnlpdqvevivrdlpdPskvkeertrlmgywfvhWfdgklfhlrikaggpnvdgehrairtaehpwllrarlddaleealpkyaavkkrpftflaqkdelidaaataaglshrllnsfkviprfalspkiyepvdgttrvgvfvtigmrydieaslrgmyvvrrkrrgllgrvaklegsKenftrclsallghnykkllnalddqeagyrtgprfddavrrmgeflakkpirladninaqvgdrivfsnegqarnvrlapkveYvfdrtgaksaeYawrglsqfgpfdrpsfanrsprilvvypsstqgkvenflsafrdgmgsnysgfskgfvdlmgltkvefvmcpvevssadrngahtkynsaiedklagagevhagivvlfedharlpddrnpyihtksllltlgvptqqvrmptvllepkSlqYTlqNfsiatyaklngtpwtvnhdkaindelvvgmglaElsgsrtekRqrfvgittvfagdgsyllgnvskeceyegysdairesmtgilrelkkrnnwrpgdtvrvvfhahRplkrvdvasivfectreigsdqniqmafvtvshDhpfvlidrsergleaarkgvfappRgaisrvgrltrllavnSpQLiKrantplptpllvslhpdstfkdvdylaeqalkftSlswrstLPaatpvtifyseriaellgrlksipnwssanlniklkwsrwfl
interface signature	PWKYYSYTNERRDRSQLKSLP

Estimated binding specificities ?

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# IC=8.573 IC/col=0.504 n_of_columns=17

specificity:

A |   0  85  24  24  24  24  10  10  24  24   0  10  24   5  24  96  96
C |   0   5  24  24  24  24  10  12  24  24   0  12  24   0  24   0   0
G |  96   5  24  24  24  24  66   5  24  24  96   5  24  86  24   0   0
T |   0   1  24  24  24  24  10  69  24  24   0  69  24   5  24   0   0

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updated Mon Dec 18 11:58:36 2023