5akn_K : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE NON-CODING STRAND B AND IN THE PRESENCE OF 2MM MN (HOMING ENDONUCLEASE I-DMOI)
reference	Marcaida et al. J.Biol.Chem. 290 18534 2015
source	DESULFUROCOCCUS MOBILIS
experiment	X-ray (resolution=2.75, R-factor=0.178)
structural superfamily	Homing endonucleases;
reference complex	2vs7_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5akn_K interface=21,23,25,29,30,31,33,37,66,68,71,72,73,75,77,79,120,122,124,150,151,153,154,156,163, envsgisayllgliigdgglYkLkYkgnRSEyRvviTaksenlikqhiaplmqflidelnvkskiQiVkgDTRyElRvSskklyyyfanmlerirlfnmreqiafikglyvaegdmtlkRlRiWnknkalleivsrwlnnlgvrntihlDDhRHgVyvlnisLrdrikfvhtilsshlnplpp
interface signature	YLYRSERTQVDTRERSRRWDDRHVL

Estimated binding specificities ?

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# IC=20.982 IC/col=1.166 n_of_columns=18

specificity:

A |   0   0   0   0  16   0   0   8  56  88   0   0   0   0   0   0   0   0
C |   0   0  96  96   0   0   0   8   8   0   0   0  16  96  96   0   0  96
G |   0  96   0   0  80  96  96   8  16   8  96   0   0   0   0  96  96   0
T |  96   0   0   0   0   0   0  72  16   0   0  96  80   0   0   0   0   0

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updated Mon Dec 18 11:51:41 2023