5akf_I : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE CODING STRAND A AND IN THE PRESENCE OF 2MM MN (HOMING ENDONUCLEASE I-DMOI)
reference	Marcaida et al. J.Biol.Chem. 290 18534 2015
source	DESULFUROCOCCUS MOBILIS
experiment	X-ray (resolution=2.45, R-factor=0.179)
structural superfamily	Homing endonucleases;
reference complex	2vs7_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5akf_I interface=21,23,25,29,30,31,33,35,37,66,71,72,73,75,77,79,120,122,124,150,151,153,154,156,163, envsgisayllgliigdgglYkLkYkgnRSEyRvViTaksenlikqhiaplmqflidelnvkskiQivkgDTRyElRvSskklyyyfanmlerirlfnmreqiafikglyvaegdmtlkRlRiWnknkalleivsrwlnnlgvrntihlDDhRHgVyvlnisLrdrikfvhtils
interface signature	YLYRSERVTQDTRERSRRWDDRHVL

Estimated binding specificities ?

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# IC=19.708 IC/col=1.159 n_of_columns=17

specificity:

A |   0   0   0   0   0  88  96   0   0   8  72   0   0   0   0   0   8
C |   0  96  96   0   0   0   0  96   8   8   8  96  96  88   0   0  80
G |  96   0   0  96  96   8   0   0   0   8   8   0   0   8  96  96   0
T |   0   0   0   0   0   0   0   0  88  72   8   0   0   0   0   0   8

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updated Mon Dec 18 11:51:22 2023