5ak9_A : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF 2MM MN (HOMING ENDONUCLEASE I-DMOI)
reference	Marcaida et al. J.Biol.Chem. 290 18534 2015
source	DESULFUROCOCCUS MOBILIS
experiment	X-ray (resolution=2.60, R-factor=0.172)
structural superfamily	Homing endonucleases;
reference complex	2vs7_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ak9_A interface=21,23,25,29,30,31,33,35,37,66,68,71,72,73,75,77,79,120,122,124,148,150,151,153,154,156,163, envsgisayllgliigdgglYkLkYkgnRSEyRvViTaksenlikqhiaplmqflidelnvkskiQiVkgDTRyElRvSskklyyyfanmlerirlfnmreqiafikglyvaegdmtlkRlRiWnknkalleivsrwlnnlgvrntiHlDDhRHgVyvlnisLrdrikfvhtilsshlnplpp
interface signature	YLYRSERVTQVDTRERSRRWHDDRHVL

Estimated binding specificities ?

readout + contact

# IC=20.975 IC/col=1.165 n_of_columns=18

specificity:

A |   0   0   0   0   0  88  96   0   0   0  81   0   0   0   0  22   0  96
C |   0  96  96   0   0   0   0  96   7   7   8  96  96  96   0  14  96   0
G |  96   0   0  96  96   1   0   0   1  29   0   0   0   0  96  53   0   0
T |   0   0   0   0   0   7   0   0  88  60   7   0   0   0   0   7   0   0

scan!

home
updated Mon Dec 18 11:51:10 2023