4z5d_AB : 3D-footprint complex

structure name	HIPB-O4 21MER COMPLEX
reference	Schumacher et al. 'To ? ? ?
source	Escherichia coli
experiment	X-ray (resolution=2.15, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	4z5h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4z5d_A interface=26,35,36,37,40, fqkiysptqlanamklvrqqngwtqSelakkigiKQAtiSnfennpdnttlttffkilqslelsmtlcdak > 4z5d_B interface=26,35,36,37,40, fqkiysptqlanamklvrqqngwtqSelakkigiKQAtiSnfennpdnttlttffkilqslelsmtlcdak
interface signature	SKQAS/SKQAS

Estimated binding specificities ?

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# IC=10.540 IC/col=0.586 n_of_columns=18

specificity:

A |   2  96  12   0   0  24  24  24  24  24  24  24  10   0   0  49   0  90
C |   4   0  23  96  96  24  24  24  24  24  24  24  33   0   0  15   0   0
G |   5   0  12   0   0  24  24  24  24  24  24  24   7  96  96  20   0   2
T |  85   0  49   0   0  24  24  24  24  24  24  24  46   0   0  12  96   4

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updated Fri Dec 15 22:22:53 2023