4yrv_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ANABAENA TRANSCRIPTION FACTOR HETR COMPLEXED WITH 21-BP DNA FROM HETP PROMOTER
reference	Jiang et al. 'Sci 5 16470 2015
source	Nostoc sp. PCC 7120
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Periplasmic binding protein-like II;
reference complex	4yrv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4yrv_A interface=60,69,71, ndidlikrlgpsamdqimlylafsamrtsghrhgafldaaataakcaiymtyleqgqnlRmtghlhhlEpKrvkiiveevrqalmegkllktlgsqepryliqfpyvwmeqypwipgrsripgtsltseekrqiehklpsnlpdaqlvtsfeflelieflhkrsqedlppehrmelsealaehikrrllysgtvtridspwgmpfyaltrpfyqertyimvedtaryfrmmkdwaekrpnamraleeldvpperwdeamqeldeiirtwadkyhqvipmilqmvfgrk > 4yrv_B interface=59,68,70, didlikrlgpsamdqimlylafsamrtsghrhgafldaaataakcaiymtyleqgqnlRmtghlhhlEpKrvkiiveevrqalmegkllktlgsqepryliqfpyvwmeqypwipgrsripgtsltseekrqiehklpsnlpdaqlvtsfeflelieflhkrsqedlppehrmelsealaehikrrllysgtvtridspwgmpfyaltrpfyertyimvedtaryfrmmkdwaekrpnamraleeldvpperwdeamqeldeiirtwadkyhqvpmilqmvfgrke
interface signature	REK/REK

Estimated binding specificities ?

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# IC=10.000 IC/col=0.526 n_of_columns=19

specificity:

A |   0   0  24  16   1   9  24  24  24  24  24  24  13   0   0  24  24   0  96
C |  96   0  24  13   0   6  24  24  24  24  24  24  57  96  96  24  24  96   0
G |   0  96  24  54  89  68  24  24  24  24  24  24  13   0   0  24  24   0   0
T |   0   0  24  13   6  13  24  24  24  24  24  24  13   0   0  24  24   0   0

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updated Fri Dec 15 22:16:26 2023