4yj0_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DM DOMAIN OF HUMAN DMRT1 BOUND TO 25MER TARGET DNA
reference	Gearhart et al. Nat.Struct.Mol.Biol. 22 442 2015
source	Homo sapiens
experiment	X-ray (resolution=3.81, R-factor=?)
structural superfamily	Cysteine-rich DNA binding domain, DM domain;
reference complex	4yj0_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4yj0_A interface=42, sprlpkcarcrnhgyasplkghkrfcmwrdcqckkcnliaeRqrvmaaqvalrrqqaqeeel > 4yj0_B interface=4,43,47,51,54,55, kspRlpkcarcrnhgyasplkghkrfcmwrdcqckkcnliaeRqrvMaaqValRRqqaqeeel > 4yj0_C interface=4,43,47,50,51,54,55, kspRlpkcarcrnhgyasplkghkrfcmwrdcqckkcnliaeRqrvMaaQValRRqqaqeeel
interface signature	R/RRMVRR/RRMQVRR

Estimated binding specificities ?

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# IC=9.908 IC/col=0.901 n_of_columns=11

specificity:

A |   6  89  89   0  96  24   6   0   0  72   8
C |  76   0   6  96   0  24   8   0   0   6   6
G |   6   6   1   0   0  24   6  96   0   6   6
T |   8   1   0   0   0  24  76   0  96  12  76

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updated Fri Dec 15 21:45:03 2023