4x23_Q : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF CENP-C IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE (HISTONE H2A)
reference	Science 340 1110 2013 Escherichia coli
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=3.50, R-factor=0.238)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	4x23_ABCDEFG 4x23_KLMNOPQ 5wcu_ABCDEFGHU 5wcu_KLMNOPQRV
redundant complexes	5wcu
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x23_Q interface=20,27, srsnraglqfpvgrihrllRkgnyaeRvgagapvylaavmeylaaevlelagnaardnkktriiprhlqlairndeelnkllsgvtiaqggvlpniqavllp

  
  ------RA                                   +6t7a_C    
                   +-------------------------1 
  ------RT         !                         +7lyb_G    
                   ! 
  RAETRT--       +-6                         +4ne1_p    
                 ! !          +--------------3 
  ------RT       ! !          !              +7wlr_E    
                 ! +----------5 
  ------RT       !            !               +7lya_E    
               --7            !             +-2 
  ------RT       !            +-------------4 +7zs9_e    
                 !                          ! 
  --IT--RA       !                          +7k78_E    
                 ! 
  ------RT       +--------------------------1u35_G

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updated Thu Dec 22 20:53:43 2022