interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF BSG25A BINDING WITH DNA
(Blastoderm-specific gene 25A)
reference'Genes 29 48 2015 X-RAY DIFFRACTION
sourceDrosophila melanogaster
experimentX-ray (resolution=3.21, R-factor=0.231)
sequence familyBEN domain;
multimeric complexes4x0g_AB 4x0g_CD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRSPAFTADKM

Estimated binding specificities ?

readout + contactlogo
# IC=6.229 IC/col=0.779 n_of_columns=8 specificity:   
A |   0   0   0  96  24   8  19  17
C |   0  96  96   0  24  17   8  17
G |   0   0   0   0  24  10   8  52
T |  96   0   0   0  24  61  61  10
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: BSG25A
CCAATAAGPubMed4x0g_AB(4.16e-03)
CCAATTGGPubMed4x0g_B(3.02e-06), 4x0g_AB(1.99e-08), 4x0g_CD(8.51e-09)

home
updated Tue Dec 19 09:39:56 2023