4wwc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FULL LENGTH YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
reference	Fillenberg et al. 'Nucleic 43 1283 2015
source	Bacillus subtilis
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Chorismate lyase-like;"Winged helix" DNA-binding domain;
reference complex	4wwc_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4wwc_A interface=38,39,48,49,50,51,53, hmninkqspipiyyqimeqlktqikngelqpdmplpsEReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvskpkmqgltsftedmksrgmtpgsrlidyqlidsteelaailgcghssihkitrvrlandipmaiesshipfeisrakqelepsaatteeanilgiqkgapvllikrttylqngtafehaksvyrgdrytfvhymdrl > 4wwc_B interface=38,39,48,49,50,51,53, hmninkqspipiyyqimeqlktqikngelqpdmplpsEReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvskpkmeqgltsftedmksrgmtpgsrlidyqlidseelaailgcgpssihkitrvrlandipmaiesshipfelagelnesiydhierynsipisrakqelepsaatteeanilgiqkgapvllikrttylqngtafehaksvyrgdrytfvhymd
interface signature	ERSRMTR/ERSRMTR

Estimated binding specificities ?

readout + contact

# IC=13.747 IC/col=0.916 n_of_columns=15

specificity:

A |   0  62  42   4   0   0   6  24   0  96  10  90   0   0  88
C |  96   4   2   8   0   0   2  24   0   0  26   0  96  96   2
G |   0  24  36  16  96  96   4  24   0   0  52   0   0   0   2
T |   0   6  16  68   0   0  84  24  96   0   8   6   0   0   4

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updated Fri Dec 15 21:03:14 2023