interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE AG(I) (ACTIVATOR) FORM OF E. COLI CUER, A COPPER EFFLUX REGULATOR, BOUND TO COPA PROMOTER DNA
(HTH-type transcriptional regulator CueR)
referenceCanalizo-Hernandez et al. Science 349 877 2015
sourceEscherichia coli
experimentX-ray (resolution=2.80, R-factor=0.212)
structural superfamilyPutative DNA-binding domain;
sequence familyMerR, DNA binding; MerR family regulatory protein;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRFY

Estimated binding specificities ?

readout + contactlogo
# IC=6.018 IC/col=0.752 n_of_columns=8 specificity:   
A |   1  14  24  16   0   0  81   0
C |  88  51  24  14  88  96   7   0
G |   0  17  24   7   7   0   7  96
T |   7  14  24  59   1   0   1   0
scan!

home
updated Mon Dec 18 11:26:49 2023