4s05_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE PMRA IN COMPLEX WITH PMRA BOX DNA
reference	Hsiao et al. 'Nat 6 8838 2015
source	Klebsiella pneumoniae
experiment	X-ray (resolution=3.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4s05_A interface=187,188,191,192,193,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNtlEVHiHnlrekigksrirtvRgfgymlann > 4s05_B interface=187,188,189,191,192,195, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNTlEVhiHnlrekigksrirtvrgfgymlann
interface signature	TNEVHHR/TNTEVH

Estimated binding specificities ?

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# IC=7.958 IC/col=0.497 n_of_columns=16

specificity:

A |   4  12  96  96   4  24  24  24  24  24  24  16   4  96  24   4
C |   4  16   0   0   0  24  24  24  24  24  24  56   4   0  24  12
G |   4   8   0   0   4  24  24  24  24  24  24  16   4   0  24  76
T |  84  60   0   0  88  24  24  24  24  24  24   8  84   0  24   4

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updated Fri Dec 15 20:43:20 2023