4s04_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE PMRA IN COMPLEX WITH PMRA BOX DNA
reference	Hsiao et al. 'Nat 6 8838 2015
source	Klebsiella pneumoniae
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4s04_E interface=188,192,193,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepatNtleVHiHnlrekigksrirtvRgfgymlann > 4s04_F interface=187,188,191,192,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNtlEVhiHnlrekigksrirtvRgfgymlann
interface signature	NVHHR/TNEVHR

Estimated binding specificities ?

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# IC=12.806 IC/col=0.711 n_of_columns=18

specificity:

A |   0   0  24   2   0   0  94  24  24  24  11  69  61  24  69   0  82  96
C |   2   0  24  94   0   0   0  24  24  24  15  11  13  24   9   0   1   0
G |   0   0  24   0   0   0   1  24  24  24  15   9   7  24  11   0   0   0
T |  94  96  24   0  96  96   1  24  24  24  55   7  15  24   7  96  13   0

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updated Fri Dec 15 20:43:02 2023